Antibiotic recovery study

This repository contains all the data and the necessary scripts used in the manuscript "Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut".

Directory structure

• Data: Data files used by the scripts to generate the figures and the metadata linking raw sequence identifiers with individuals and timepoints used in this study.
• Scripts: Scripts used for performing various analyses

Downloading this repository

1. Clone the core component using git

git clone https://github.com/csb5/Recovery_Determinants_Study.git

Raw seqeunce data

The raw sequence data associated with this project can be found under following accession IDs on SRA:

1. NUH cohort - PRJEB41865
2. Singapore cohort - PRJEB41866
3. Mouse data - SRP142225

Citation

Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut, https://www.nature.com/articles/s41559-020-1236-0.