From 297b93da63a7ea369db25726fbe15b0142454c46 Mon Sep 17 00:00:00 2001 From: Niroj33 <86530493+professor3333@users.noreply.github.com> Date: Sun, 15 Nov 2026 08:47:04 +0545 Subject: [PATCH] Run the declared held-out test evaluation of the CRF and the run-3 DeBERTa Declared by the owner on 2026-11-15: "Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come." The frozen systems (rules-2, crf-batches-01-02 from v0.1.0, the run-3 DeBERTa from model-deberta-3-run3) were scored once on the locked test split; every run is in docs/test-access-log.md. On the 146 model-drafted test records (agreement, not accuracy) the CRF leads: typed F1 0.193 against 0.154 for DeBERTa (paired -0.039 [-0.080, -0.000], clear only just) and 0.048 for rules. The CRF is clearly more precise and invents clearly fewer prerequisites; DeBERTa has clearly higher recall and fewer reversed meanings. On the 4 hand-labelled test records no difference is clear, so the release gates cannot be judged; no target changed. --- README.md | 25 +- annotations/README.md | 3 +- docs/dataset_card.md | 4 +- docs/evaluation.md | 7 +- docs/model_card.md | 17 ++ docs/targets.md | 1 + docs/test-access-log.md | 10 + reports/test-evaluation/README.md | 125 +++++++++ ..._weightingsqrt-learning_rate5e-05-seed2.md | 25 ++ .../compare_agreement_rules-2.md | 25 ++ ..._weightingsqrt-learning_rate5e-05-seed2.md | 25 ++ .../test-evaluation/compare_manual_rules-2.md | 25 ++ .../crf-batches-01-02_agreement.md | 57 +++++ .../crf-batches-01-02_manual.md | 57 +++++ ...sqrt-learning_rate5e-05-seed2_agreement.md | 57 +++++ ...ingsqrt-learning_rate5e-05-seed2_manual.md | 57 +++++ .../model_drafted_test_ids.json | 148 +++++++++++ .../predictions/crf-batches-01-02.jsonl | 238 ++++++++++++++++++ ...ightingsqrt-learning_rate5e-05-seed2.jsonl | 238 ++++++++++++++++++ .../test-evaluation/predictions/rules-2.jsonl | 238 ++++++++++++++++++ reports/test-evaluation/rules-2_agreement.md | 57 +++++ reports/test-evaluation/rules-2_manual.md | 57 +++++ scripts/experiments/test_evaluation.sh | 40 +++ 23 files changed, 1531 insertions(+), 5 deletions(-) create mode 100644 reports/test-evaluation/README.md create mode 100644 reports/test-evaluation/compare_agreement_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md create mode 100644 reports/test-evaluation/compare_agreement_rules-2.md create mode 100644 reports/test-evaluation/compare_manual_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md create mode 100644 reports/test-evaluation/compare_manual_rules-2.md create mode 100644 reports/test-evaluation/crf-batches-01-02_agreement.md create mode 100644 reports/test-evaluation/crf-batches-01-02_manual.md create mode 100644 reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_agreement.md create mode 100644 reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_manual.md create mode 100644 reports/test-evaluation/model_drafted_test_ids.json create mode 100644 reports/test-evaluation/predictions/crf-batches-01-02.jsonl create mode 100644 reports/test-evaluation/predictions/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl create mode 100644 reports/test-evaluation/predictions/rules-2.jsonl create mode 100644 reports/test-evaluation/rules-2_agreement.md create mode 100644 reports/test-evaluation/rules-2_manual.md create mode 100644 scripts/experiments/test_evaluation.sh diff --git a/README.md b/README.md index 60e1410..bc22c32 100644 --- a/README.md +++ b/README.md @@ -162,10 +162,33 @@ and none was used for training. | 1 · Feasibility | Pinned ingestion, corpus statistics, label schema, offset-preserving preprocessing, pilot sample, annotation tooling | ✅ built | | 1 · Pilot | 100-document pilot (`pilot-2`: 22 hand-labelled, 78 from model drafts), [decision gate](docs/pilot_gate.md), guidelines v0.2 frozen, [acceptance targets](docs/targets.md) declared | ✅ done | | 2 · Baselines | Rules baseline, CRF + logistic-regression attributes and groups, evaluator with bootstrap CIs, evidence viewer | ✅ built · preliminary pilot dev scores | -| 3 · Neural models | Frozen leakage-safe splits, annotation batches (01–04, 06, 07: model-drafted), DistilBERT and DeBERTa-v3 with span / role / group heads, experiment runner, CRF ablations and learning curve | 🟨 trained on model drafts (run 3) · DeBERTa ≈ CRF on held-out agreement, no clear winner | +| 3 · Neural models | Frozen leakage-safe splits, annotation batches (01–04, 06, 07: model-drafted), DistilBERT and DeBERTa-v3 with span / role / group heads, experiment runner, CRF ablations and learning curve | 🟨 trained on model drafts (run 3) · dev: DeBERTa ≈ CRF, no clear winner · test: CRF ahead | | 4 · Reliability | Calibration and review policy, formatting robustness (rules: 100%), challenge-set and error-catalogue tooling | 🟨 tooling ready · thresholds await labels | | 5 · Application | FastAPI API, review UI, SQLite (WAL) with append-only history, exports, Docker Compose stack, release manifests, tested rollback, CI image smoke test | ✅ built | | 6 · Production | Benchmark harness, ONNX/INT8 export (FP32 parity exact; INT8 fails the accuracy gate on the trained DeBERTa), local proxy benchmarks and load tests, monitoring; CRF v0.1.0 measured and deployed (`app verify` passed) on the 2 vCPU / 4 GB target host | 🟨 CRF meets every serving target on the target host · transformers not yet measured there | +| 7 · Validation | Declared held-out test evaluation, fresh-clone reproduction (macOS and Linux), [public demo](https://professor3333.github.io/TriggerMap/), downloadable models | 🟨 test evaluated once (agreement; gates not judgeable with 4 hand-labelled test records) · no prospective batch or usability study | + +### Held-out test results (declared release evaluation, 2026-11-15) + +Run once, on the owner's declaration, on the locked test split (newest project groups, so it +measures temporal and project shift). It is logged in [`docs/test-access-log.md`](docs/test-access-log.md). +The 146 model-drafted test records measure **agreement with the drafting model, not accuracy**. +95% project-group bootstrap intervals. + +| Test split, 146 model-drafted records | Typed-condition micro-F1 | Exact span precision | Exact span recall | False-prerequisite rate | Reversed-meaning rate | +|---|---:|---:|---:|---:|---:| +| Rules (`rules-2`) | 0.048 [0.021, 0.082] | 0.101 | 0.053 | 0.646 | 0.043 | +| CRF (`crf-batches-01-02`, default) | **0.193 [0.154, 0.238]** | **0.263** | 0.219 | **0.482** | 0.037 | +| DeBERTa-v3-small (run 3) | 0.154 [0.125, 0.186] | 0.114 | **0.393** | 0.650 | **0.005** | + +The CRF agrees with the drafts better than DeBERTa (−0.039 typed F1 for DeBERTa, 95% CI +[−0.080, −0.000], clear but only just). It is clearly more precise and invents clearly fewer +prerequisites. DeBERTa has clearly higher recall and clearly fewer reversed meanings. It predicts +8.4 conditions per document where the test drafts mark 2.4. Its dev lead did not transfer. On the +4 hand-labelled test records (7 conditions), typed F1 is 0.125 (CRF), 0.133 (DeBERTa) and 0.167 +(rules), and no difference is clear. The release gates in [`docs/targets.md`](docs/targets.md) +are judged on hand-labelled test records only, so they **cannot be judged** with 4. Full report, +with per-class support: [`reports/test-evaluation/`](reports/test-evaluation/README.md). ### Preliminary pilot results (dev split only) diff --git a/annotations/README.md b/annotations/README.md index f17266b..105e37f 100644 --- a/annotations/README.md +++ b/annotations/README.md @@ -78,7 +78,8 @@ against these batches are reported as agreement with the drafting model, not acc were also drawn for hand labelling and were submitted from model drafts on 2026-11-09, by the owner's decision: every record is `model_draft_accepted` (`model-batch-07-guidelines-0.2`, `model-batch-04-guidelines-0.2`), with no annotation time recorded. The drafting process read -the batch-04 test texts; no model was developed, tuned or scored on them. CI checks batch-04 +the batch-04 test texts; no model was developed or tuned on them. They were scored once, in the +declared release evaluation of 2026-11-15 (`reports/test-evaluation/`). CI checks batch-04 records for provenance only. `second-drafts/batch-07.jsonl` (annotation version `batch-07-draft-2`) redrafts the same diff --git a/docs/dataset_card.md b/docs/dataset_card.md index 675b08a..bec96f2 100644 --- a/docs/dataset_card.md +++ b/docs/dataset_card.md @@ -131,7 +131,9 @@ Annotated so far, by split: | `batch-04` | 0 | 0 | 138 | 0 | Test records are never read for development. The batch-04 test texts were read once, to draft -their model labels; nothing was tuned or scored on them, and no test evaluation has been run ([`test-access-log.md`](test-access-log.md) has no entries). +their model labels; nothing was tuned on them. They were scored once, in the declared release +evaluation of 2026-11-15 ([`reports/test-evaluation/`](../reports/test-evaluation/README.md), +logged in [`test-access-log.md`](test-access-log.md)). ## Sampling diff --git a/docs/evaluation.md b/docs/evaluation.md index 4b5c9ba..c7562d4 100644 --- a/docs/evaluation.md +++ b/docs/evaluation.md @@ -68,7 +68,7 @@ gated. |---|---|---| | train | training | Never scored as a result. | | dev | model selection, thresholds, calibration (on a held-out half) | Every reported number so far is dev. | -| test | final release evaluation only | Locked. `--split test` refuses to run without `--release-evaluation ""`, and every such run is appended to [`test-access-log.md`](test-access-log.md) (no entries so far). | +| test | final release evaluation only | Locked. `--split test` refuses to run without `--release-evaluation ""`, and every such run is appended to [`test-access-log.md`](test-access-log.md). Used once, in the declared release evaluation of 2026-11-15 ([`reports/test-evaluation/`](../reports/test-evaluation/README.md)). | | challenge set, prospective batch | reported separately | Never mixed into test numbers. | **Gold origin.** Each annotation records how its labels were made (`origin`, see @@ -85,7 +85,10 @@ on (`training_origins` in `metadata.json`). **Current status (2026-11-09).** Only 22 records are `manual` (10 in dev, 4 in test). Every batch after the pilot, including the test batch `batch-04`, is model-drafted, by the owner's decision, so new results are reported as agreement with the drafting model, labelled as such, and the release gates in -[`targets.md`](targets.md) cannot be judged as declared. +[`targets.md`](targets.md) cannot be judged as declared. The owner has confirmed that no hand +labels will come. The test split was evaluated once on 2026-11-15, on the owner's declaration: +agreement on 146 model-drafted test records, and accuracy on the 4 hand-labelled ones +([`reports/test-evaluation/`](../reports/test-evaluation/README.md)). The model drafts are not stable reference labels. Two model drafting runs of the 100 `batch-07` documents agree at 0.375 typed F1 [0.309, 0.444] and 0.431 exact span F1 diff --git a/docs/model_card.md b/docs/model_card.md index a47f91c..e289030 100644 --- a/docs/model_card.md +++ b/docs/model_card.md @@ -83,6 +83,23 @@ model drafts. `crf-batches-01-02` adds `batch-02` (239 records: 7 `manual`, 232 Its dev results, as agreement with the model drafts and as accuracy on the 10 hand-labelled documents, are in [`reports/agreement/`](../reports/agreement/README.md). +## Held-out test results (declared release evaluation, 2026-11-15) + +Run once on the locked test split, which holds the newest project groups (temporal and +project shift). Agreement with 146 model-drafted test records, not accuracy: + +| System | Typed F1 | Span precision | Span recall | False-prerequisite rate | Reversed-meaning rate | +|---|---:|---:|---:|---:|---:| +| CRF `crf-batches-01-02` (default) | 0.193 [0.154, 0.238] | 0.263 | 0.219 | 0.482 | 0.037 | +| DeBERTa-v3-small run 3 | 0.154 [0.125, 0.186] | 0.114 | 0.393 | 0.650 | 0.005 | +| `rules-2` | 0.048 [0.021, 0.082] | 0.101 | 0.053 | 0.646 | 0.043 | + +DeBERTa − CRF: typed F1 −0.039 [−0.080, −0.000], clear but only just. The CRF is clearly more +precise and invents clearly fewer prerequisites; DeBERTa has clearly higher recall and fewer +reversed meanings. On the 4 hand-labelled test records (7 conditions), no difference is clear, +and the release gates cannot be judged. Per-class support and full tables: +[`reports/test-evaluation/`](../reports/test-evaluation/README.md). + ## Preliminary dev results These are measured on the **10 hand-labelled dev documents** (17 gold conditions). The intervals diff --git a/docs/targets.md b/docs/targets.md index 9a4fc7a..a91ea1f 100644 --- a/docs/targets.md +++ b/docs/targets.md @@ -99,3 +99,4 @@ about 512 tokens, ≤ 8 s at about 2,000 tokens, peak memory ≤ 3 GB, throughpu | 2026-11-02 | First declaration, after the pilot and before any test results. | | 2026-11-05 | Status note added: labels after the pilot are model drafts, so the gates cannot be judged as declared. No target changed; the test-access log still has no entries. | | 2026-11-09 | batch-04 (138 test records) and batch-07 (100 dev records) submitted from model drafts by the owner's decision; hand-labelled test records remain 4. No target changed; the test-access log still has no entries. | +| 2026-11-15 | Declared release evaluation on the test split (owner: "Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come"). With 4 hand-labelled test records the gates are reported as not judgeable; results in `reports/test-evaluation/`. No target changed, and none may change for these releases. | diff --git a/docs/test-access-log.md b/docs/test-access-log.md index bb1adaa..1cdf755 100644 --- a/docs/test-access-log.md +++ b/docs/test-access-log.md @@ -4,3 +4,13 @@ Every evaluation on the locked test split, appended automatically by `triggermap | UTC time | Models | Gold | Reason | |---|---|---|---| +| 2026-11-15 02:58 | rules-2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | rules-2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | crf-batches-01-02 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | crf-batches-01-02 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | crf-batches-01-02, deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | crf-batches-01-02, deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:58 | crf-batches-01-02, rules-2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | +| 2026-11-15 02:59 | crf-batches-01-02, rules-2 | `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` | Final held-out evaluation of v0.1.0 (CRF) and the run-3 DeBERTa candidate; no hand labels will come. | diff --git a/reports/test-evaluation/README.md b/reports/test-evaluation/README.md new file mode 100644 index 0000000..bd0d0b1 --- /dev/null +++ b/reports/test-evaluation/README.md @@ -0,0 +1,125 @@ +# Held-out test evaluation (declared release evaluation, 2026-11-15) + +This is the one declared evaluation on the locked test split of `splits/pool-v1.json`. The owner +declared it on 2026-11-15 with the reason: *"Final held-out evaluation of v0.1.0 (CRF) and the +run-3 DeBERTa candidate; no hand labels will come."* Every scoring run is logged in +[`docs/test-access-log.md`](../../docs/test-access-log.md). Nothing was tuned on these results, +and no system changes because of them. The test split holds the newest project groups +(published 2024-04 → 2026-10), so the results measure **temporal and project shift**. + +## Systems (frozen) + +| System | Source | Conditions predicted (146 docs) | +|---|---|---:| +| `rules-2` | deterministic rules | 188 (1.3 per document) | +| CRF `crf-batches-01-02` (default) | release [v0.1.0](https://github.com/professor3333/TriggerMap/releases/tag/v0.1.0) | 297 (2.0 per document) | +| DeBERTa-v3-small `deberta-3-…sqrt…5e-05-seed2` | pre-release [model-deberta-3-run3](https://github.com/professor3333/TriggerMap/releases/tag/model-deberta-3-run3), downloaded and checked against its SHA-256 | 1,227 (8.4 per document) | + +Before scoring, each system's predictions on the 88 pilot documents outside the test split +were confirmed identical to its committed dev predictions, so these are the same frozen +systems that the dev reports describe. + +## Test data: two slices + +| Slice | Documents | Gold conditions | What it measures | +|---|---:|---:|---| +| Model-drafted test records (138 `batch-04` + 8 `pilot-2`) | 146 (139 with conditions, 7 without) | 356 | **Agreement with the drafting model, not accuracy** | +| Hand-labelled test records (`pilot-2`, `origin: manual`) | 4 (3 with conditions, 1 without) | 7 | Accuracy, but far too few documents to conclude anything | + +The `batch-04` labels were drafted by the same session and process as the first batch-07 +draft (2026-11-09). That session read these test texts in order to draft them. No model was +developed, tuned or scored on them before this evaluation. + +## Results: agreement, 146 model-drafted test records + +95% project-group bootstrap intervals (1,000 resamples, seed 0). + +| Metric | `rules-2` | CRF (default) | DeBERTa run 3 | +|---|---:|---:|---:| +| Typed-condition micro-F1 | 0.048 [0.021, 0.082] | **0.193 [0.154, 0.238]** | 0.154 [0.125, 0.186] | +| Exact span F1 | 0.070 [0.035, 0.110] | **0.239 [0.194, 0.288]** | 0.177 [0.146, 0.207] | +| Exact span precision | 0.101 [0.051, 0.168] | **0.263 [0.207, 0.335]** | 0.114 [0.092, 0.137] | +| Exact span recall | 0.053 [0.027, 0.081] | 0.219 [0.176, 0.266] | **0.393 [0.337, 0.444]** | +| Role macro-F1 | 0.017 [0.008, 0.028] | 0.132 [0.093, 0.179] | 0.125 [0.087, 0.171] | +| Group exact-match F1 | 0.000 | 0.000 | 0.000 | +| Document exact match, with conditions (139) | 0.000 | 0.058 [0.016, 0.101] | 0.043 [0.014, 0.075] | +| Document exact match, without conditions (7) | 0.857 [0.500, 1.000] | 0.857 [0.500, 1.000] | 0.571 [0.167, 1.000] | +| False-prerequisite rate (lower is better) | 0.646 [0.500, 0.762] | **0.482 [0.400, 0.556]** | 0.650 [0.605, 0.691] | +| Reversed-meaning rate (lower is better) | 0.043 [0.000, 0.102] | 0.037 [0.008, 0.073] | **0.005 [0.000, 0.014]** | + +Per-role exact span + role F1, with gold support: + +| Role (support) | CRF | DeBERTa run 3 | +|---|---:|---:| +| REQUIRED (299) | 0.240 | 0.202 | +| EXCEPTION (11) | 0.000 | 0.133 | +| NOT_REQUIRED (16) | 0.209 | 0.114 | +| UNCERTAIN (30) | 0.080 | 0.053 | + +Per-category exact span + category F1, with gold support: + +| Category (support) | CRF | DeBERTa run 3 | +|---|---:|---:| +| CONFIGURATION (57) | 0.188 | 0.188 | +| USAGE (166) | 0.203 | 0.149 | +| ACCESS (91) | 0.247 | 0.177 | +| PLATFORM (42) | 0.111 | 0.119 | + +Paired differences (system minus CRF): + +| Metric | DeBERTa run 3 − CRF | `rules-2` − CRF | +|---|---:|---:| +| Typed-condition micro-F1 | −0.039 [−0.080, −0.000] clearly worse (only just) | −0.145 [−0.190, −0.105] clearly worse | +| Exact span F1 | −0.062 [−0.106, −0.019] clearly worse | −0.169 [−0.221, −0.127] clearly worse | +| Exact span precision | −0.149 [−0.208, −0.101] clearly worse | −0.162 [−0.225, −0.111] clearly worse | +| Exact span recall | +0.174 [+0.119, +0.228] clearly better | −0.166 [−0.214, −0.125] clearly worse | +| False-prerequisite rate | +0.168 [+0.106, +0.239] clearly worse | +0.164 [+0.061, +0.268] clearly worse | +| Reversed-meaning rate | −0.032 [−0.067, −0.002] clearly better | +0.006 [−0.046, +0.066] not clear | + +## Results: accuracy, 4 hand-labelled test records + +| Metric | `rules-2` | CRF (default) | DeBERTa run 3 | +|---|---:|---:|---:| +| Typed-condition micro-F1 | 0.167 [0.000, 0.286] | 0.125 [0.000, 0.182] | 0.133 [0.000, 0.235] | +| Exact span F1 | 0.167 [0.000, 0.286] | 0.125 [0.000, 0.182] | 0.200 [0.000, 0.545] | +| False-prerequisite rate | 0.500 [0.000, 1.000] | 0.667 [0.000, 0.750] | 0.684 [0.500, 0.889] | + +No paired difference on this slice is clear. Seven gold conditions in four documents cannot +separate these systems. + +## Release targets + +[`docs/targets.md`](../../docs/targets.md) judges the release gates on hand-labelled test +records only. With 4 such records, **the gates cannot be judged as declared**, and they are +reported as not judgeable. The targets were not changed after the fact. + +## Reading + +- **The CRF remains the right default.** On the 146 test records it agrees with the drafts + better than DeBERTa (typed F1 0.193 against 0.154; the difference is clear but only just). + It is far more precise (0.263 against 0.114) and invents clearly fewer prerequisites (0.482 + against 0.650). The pre-set rule kept the CRF before any test result was seen, and the test + result supports that choice. +- **DeBERTa's dev lead did not transfer to the test drafts.** On dev it led the CRF without a + clear difference (held-out typed F1 0.185 against 0.127). On test it trails. It predicts 8.4 + conditions per document where the test drafts mark 2.4, so its high recall (0.393) costs + precision. This matches batch-07, where DeBERTa's lead was clear only against the denser + second draft. Against drafts made the way `batch-04` was made, it had no clear lead there + either. +- **DeBERTa is better at one of the two errors this project weighs most:** reversed meaning + (0.005 against 0.037, clear). The CRF is better at the other: invented prerequisites. +- **Both systems remain weak in absolute terms.** No group is ever matched exactly, the CRF + finds no EXCEPTION condition, and fewer than 6% of condition-bearing documents come out + fully right. These are agreement scores against one drafting model on newer projects. They + are not accuracy, and the 4 hand-labelled documents cannot settle accuracy. + +## Reproduce + +```bash +# predictions (frozen systems; DeBERTa from the model-deberta-3-run3 asset) +uv run triggermap predict --sample annotations/batches/batch-04.json annotations/pilot/pilot_manifest.json --out reports/test-evaluation/predictions/rules-2.jsonl +uv run triggermap predict --model crf --model-dir artifacts/crf-batches-01-02 --sample annotations/batches/batch-04.json annotations/pilot/pilot_manifest.json --out reports/test-evaluation/predictions/crf-batches-01-02.jsonl +uv run triggermap predict --model transformer --model-dir deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 --sample annotations/batches/batch-04.json annotations/pilot/pilot_manifest.json --out reports/test-evaluation/predictions/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl +# scoring: a declared release evaluation only (it appends to docs/test-access-log.md) +bash scripts/experiments/test_evaluation.sh "" +``` diff --git a/reports/test-evaluation/compare_agreement_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md b/reports/test-evaluation/compare_agreement_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md new file mode 100644 index 0000000..0a23f54 --- /dev/null +++ b/reports/test-evaluation/compare_agreement_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md @@ -0,0 +1,25 @@ +# Test split, agreement (146): deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 minus crf-batches-01-02 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: all; subset `reports/test-evaluation/model_drafted_test_ids.json`; 146 documents) +- Baseline (A): `reports/test-evaluation/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02) +- Candidate (B): `reports/test-evaluation/predictions/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 146 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-batches-01-02) | B (deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.193 | 0.154 | -0.039 | [-0.080, -0.000] | B clearly worse | +| Exact span F1 | 0.239 | 0.177 | -0.062 | [-0.106, -0.019] | B clearly worse | +| Exact span precision | 0.263 | 0.114 | -0.149 | [-0.208, -0.101] | B clearly worse | +| Exact span recall | 0.219 | 0.393 | +0.174 | [+0.119, +0.228] | B clearly better | +| Role macro-F1 (roles with gold support) | 0.132 | 0.125 | -0.007 | [-0.061, +0.042] | no clear difference | +| Category macro-F1 | 0.187 | 0.158 | -0.029 | [-0.077, +0.015] | no clear difference | +| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.058 | 0.043 | -0.014 | [-0.053, +0.023] | no clear difference | +| Complete-document exact match, documents without conditions | 0.857 | 0.571 | -0.286 | [-0.800, +0.286] | no clear difference | +| False prerequisite rate (lower is better) | 0.482 | 0.650 | +0.168 | [+0.106, +0.239] | B clearly worse | +| Reversed meaning rate (lower is better) | 0.037 | 0.005 | -0.032 | [-0.067, -0.002] | B clearly better | +| Category accuracy on exactly matched spans | 0.859 | 0.893 | +0.034 | [-0.055, +0.126] | no clear difference | +| Role accuracy on exactly matched spans | 0.923 | 0.979 | +0.055 | [-0.002, +0.115] | no clear difference | diff --git a/reports/test-evaluation/compare_agreement_rules-2.md b/reports/test-evaluation/compare_agreement_rules-2.md new file mode 100644 index 0000000..c18afa0 --- /dev/null +++ b/reports/test-evaluation/compare_agreement_rules-2.md @@ -0,0 +1,25 @@ +# Test split, agreement (146): rules-2 minus crf-batches-01-02 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: all; subset `reports/test-evaluation/model_drafted_test_ids.json`; 146 documents) +- Baseline (A): `reports/test-evaluation/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02) +- Candidate (B): `reports/test-evaluation/predictions/rules-2.jsonl` (rules-2) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 146 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-batches-01-02) | B (rules-2) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.193 | 0.048 | -0.145 | [-0.190, -0.105] | B clearly worse | +| Exact span F1 | 0.239 | 0.070 | -0.169 | [-0.221, -0.127] | B clearly worse | +| Exact span precision | 0.263 | 0.101 | -0.162 | [-0.225, -0.111] | B clearly worse | +| Exact span recall | 0.219 | 0.053 | -0.166 | [-0.214, -0.125] | B clearly worse | +| Role macro-F1 (roles with gold support) | 0.132 | 0.017 | -0.115 | [-0.160, -0.075] | B clearly worse | +| Category macro-F1 | 0.187 | 0.060 | -0.127 | [-0.175, -0.083] | B clearly worse | +| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.058 | 0.000 | -0.058 | [-0.101, -0.016] | B clearly worse | +| Complete-document exact match, documents without conditions | 0.857 | 0.857 | +0.000 | [+0.000, +0.000] | no clear difference | +| False prerequisite rate (lower is better) | 0.482 | 0.646 | +0.164 | [+0.061, +0.268] | B clearly worse | +| Reversed meaning rate (lower is better) | 0.037 | 0.043 | +0.006 | [-0.046, +0.066] | no clear difference | +| Category accuracy on exactly matched spans | 0.859 | 0.842 | -0.017 | [-0.237, +0.162] | no clear difference | +| Role accuracy on exactly matched spans | 0.923 | 0.789 | -0.134 | [-0.331, +0.038] | no clear difference | diff --git a/reports/test-evaluation/compare_manual_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md b/reports/test-evaluation/compare_manual_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md new file mode 100644 index 0000000..e561a90 --- /dev/null +++ b/reports/test-evaluation/compare_manual_deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.md @@ -0,0 +1,25 @@ +# Test split, hand-labelled (4): deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 minus crf-batches-01-02 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: manual; 4 documents) +- Baseline (A): `reports/test-evaluation/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02) +- Candidate (B): `reports/test-evaluation/predictions/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 4 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-batches-01-02) | B (deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.125 | 0.133 | +0.008 | [-0.022, +0.068] | no clear difference | +| Exact span F1 | 0.125 | 0.200 | +0.075 | [-0.022, +0.545] | no clear difference | +| Exact span precision | 0.111 | 0.130 | +0.019 | [-0.071, +0.375] | no clear difference | +| Exact span recall | 0.143 | 0.429 | +0.286 | [+0.000, +1.000] | no clear difference | +| Role macro-F1 (roles with gold support) | 0.333 | 0.413 | +0.080 | [+0.000, +0.545] | no clear difference | +| Category macro-F1 | 0.111 | 0.206 | +0.095 | [+0.000, +0.143] | no clear difference | +| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents without conditions | 1.000 | 0.000 | -1.000 | [-1.000, +0.000] | no clear difference | +| False prerequisite rate (lower is better) | 0.667 | 0.684 | +0.018 | [-0.212, +0.889] | no clear difference | +| Reversed meaning rate (lower is better) | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Category accuracy on exactly matched spans | 1.000 | 0.667 | -0.333 | [-0.500, +0.000] | no clear difference | +| Role accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +1.000] | no clear difference | diff --git a/reports/test-evaluation/compare_manual_rules-2.md b/reports/test-evaluation/compare_manual_rules-2.md new file mode 100644 index 0000000..f961c81 --- /dev/null +++ b/reports/test-evaluation/compare_manual_rules-2.md @@ -0,0 +1,25 @@ +# Test split, hand-labelled (4): rules-2 minus crf-batches-01-02 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: manual; 4 documents) +- Baseline (A): `reports/test-evaluation/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02) +- Candidate (B): `reports/test-evaluation/predictions/rules-2.jsonl` (rules-2) +- Bootstrap: 1000 paired resamples, project clusters, seed 0 +- Documents: 4 + +Differences are B minus A with 95% paired bootstrap intervals. *Clear* means the whole interval lies on one side of zero. + +| Metric | A (crf-batches-01-02) | B (rules-2) | B - A | 95% CI | Verdict | +|---|---:|---:|---:|:---:|---| +| Typed condition micro-F1 (span + category + role) | 0.125 | 0.167 | +0.042 | [+0.000, +0.104] | no clear difference | +| Exact span F1 | 0.125 | 0.167 | +0.042 | [+0.000, +0.104] | no clear difference | +| Exact span precision | 0.111 | 0.200 | +0.089 | [+0.000, +0.190] | no clear difference | +| Exact span recall | 0.143 | 0.143 | +0.000 | [+0.000, +0.000] | no clear difference | +| Role macro-F1 (roles with gold support) | 0.333 | 0.250 | -0.083 | [-0.083, +0.000] | no clear difference | +| Category macro-F1 | 0.111 | 0.167 | +0.056 | [+0.000, +0.071] | no clear difference | +| Group exact-match F1 | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents with conditions | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Complete-document exact match, documents without conditions | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| False prerequisite rate (lower is better) | 0.667 | 0.500 | -0.167 | [-0.750, +1.000] | no clear difference | +| Reversed meaning rate (lower is better) | 0.000 | 0.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Category accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | +| Role accuracy on exactly matched spans | 1.000 | 1.000 | +0.000 | [+0.000, +0.000] | no clear difference | diff --git a/reports/test-evaluation/crf-batches-01-02_agreement.md b/reports/test-evaluation/crf-batches-01-02_agreement.md new file mode 100644 index 0000000..f872f0b --- /dev/null +++ b/reports/test-evaluation/crf-batches-01-02_agreement.md @@ -0,0 +1,57 @@ +# Test split, agreement with 146 model-drafted records: crf-batches-01-02 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: all; subset `reports/test-evaluation/model_drafted_test_ids.json`; 146 documents) +- Predictions: `reports/test-evaluation/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02) +- Bootstrap: 1000 resamples, project clusters, seed 0 +- Documents: 146 (139 with gold conditions, 7 without) + +## Headline metrics (95% bootstrap intervals) + +| Metric | Estimate | 95% CI | +|---|---:|:---:| +| Typed condition micro-F1 (span + category + role) | 0.193 | [0.154, 0.238] | +| Exact span F1 | 0.239 | [0.194, 0.288] | +| Exact span precision | 0.263 | [0.207, 0.335] | +| Exact span recall | 0.219 | [0.176, 0.266] | +| Role macro-F1 (roles with gold support) | 0.132 | [0.093, 0.179] | +| Category macro-F1 | 0.187 | [0.143, 0.238] | +| Group exact-match F1 | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents with conditions | 0.058 | [0.016, 0.101] | +| Complete-document exact match, documents without conditions | 0.857 | [0.500, 1.000] | +| False prerequisite rate (lower is better) | 0.482 | [0.400, 0.556] | +| Reversed meaning rate (lower is better) | 0.037 | [0.008, 0.073] | +| Category accuracy on exactly matched spans | 0.859 | [0.784, 0.934] | +| Role accuracy on exactly matched spans | 0.923 | [0.867, 0.974] | + +## Per-role results (exact span + role) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| REQUIRED | 0.279 | 0.211 | 0.240 | 299 | +| EXCEPTION | 0.000 | 0.000 | 0.000 | 11 | +| NOT_REQUIRED | 0.137 | 0.438 | 0.209 | 16 | +| UNCERTAIN | 0.100 | 0.067 | 0.080 | 30 | + +## Per-category results (exact span + category) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| CONFIGURATION | 0.183 | 0.193 | 0.188 | 57 | +| USAGE | 0.231 | 0.181 | 0.203 | 166 | +| ACCESS | 0.242 | 0.253 | 0.247 | 91 | +| PLATFORM | 0.250 | 0.071 | 0.111 | 42 | + +## Precision versus coverage + +| Coverage | Confidence ≥ | Typed precision | Retained recall | +|---:|---:|---:|---:| +| 10% | 0.778 | 0.467 | 0.039 | +| 20% | 0.711 | 0.424 | 0.070 | +| 30% | 0.635 | 0.382 | 0.096 | +| 40% | 0.561 | 0.345 | 0.115 | +| 50% | 0.517 | 0.304 | 0.126 | +| 60% | 0.477 | 0.287 | 0.143 | +| 70% | 0.421 | 0.260 | 0.152 | +| 80% | 0.377 | 0.252 | 0.169 | +| 90% | 0.310 | 0.232 | 0.174 | +| 100% | 0.170 | 0.212 | 0.177 | diff --git a/reports/test-evaluation/crf-batches-01-02_manual.md b/reports/test-evaluation/crf-batches-01-02_manual.md new file mode 100644 index 0000000..bbe6569 --- /dev/null +++ b/reports/test-evaluation/crf-batches-01-02_manual.md @@ -0,0 +1,57 @@ +# Test split, 4 hand-labelled records: crf-batches-01-02 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: manual; 4 documents) +- Predictions: `reports/test-evaluation/predictions/crf-batches-01-02.jsonl` (crf-batches-01-02) +- Bootstrap: 1000 resamples, project clusters, seed 0 +- Documents: 4 (3 with gold conditions, 1 without) + +## Headline metrics (95% bootstrap intervals) + +| Metric | Estimate | 95% CI | +|---|---:|:---:| +| Typed condition micro-F1 (span + category + role) | 0.125 | [0.000, 0.182] | +| Exact span F1 | 0.125 | [0.000, 0.182] | +| Exact span precision | 0.111 | [0.000, 0.143] | +| Exact span recall | 0.143 | [0.000, 0.250] | +| Role macro-F1 (roles with gold support) | 0.333 | [0.000, 0.333] | +| Category macro-F1 | 0.111 | [0.000, 0.200] | +| Group exact-match F1 | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] | +| False prerequisite rate (lower is better) | 0.667 | [0.000, 0.750] | +| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] | +| Category accuracy on exactly matched spans | 1.000 | [0.000, 1.000] | +| Role accuracy on exactly matched spans | 1.000 | [0.000, 1.000] | + +## Per-role results (exact span + role) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| REQUIRED | 0.000 | 0.000 | 0.000 | 6 | +| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 | +| NOT_REQUIRED | 0.500 | 1.000 | 0.667 | 1 | +| UNCERTAIN | 0.000 | 0.000 | 0.000 | 0 | + +## Per-category results (exact span + category) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| CONFIGURATION | 0.000 | 0.000 | 0.000 | 0 | +| USAGE | 0.000 | 0.000 | 0.000 | 3 | +| ACCESS | 0.200 | 1.000 | 0.333 | 1 | +| PLATFORM | 0.000 | 0.000 | 0.000 | 3 | + +## Precision versus coverage + +| Coverage | Confidence ≥ | Typed precision | Retained recall | +|---:|---:|---:|---:| +| 11% | 0.929 | 1.000 | 0.143 | +| 22% | 0.887 | 0.500 | 0.143 | +| 33% | 0.698 | 0.333 | 0.143 | +| 44% | 0.693 | 0.250 | 0.143 | +| 44% | 0.693 | 0.250 | 0.143 | +| 56% | 0.619 | 0.200 | 0.143 | +| 67% | 0.444 | 0.167 | 0.143 | +| 78% | 0.440 | 0.143 | 0.143 | +| 89% | 0.317 | 0.125 | 0.143 | +| 100% | 0.239 | 0.111 | 0.143 | diff --git a/reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_agreement.md b/reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_agreement.md new file mode 100644 index 0000000..c4742a8 --- /dev/null +++ b/reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_agreement.md @@ -0,0 +1,57 @@ +# Test split, agreement with 146 model-drafted records: deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: all; subset `reports/test-evaluation/model_drafted_test_ids.json`; 146 documents) +- Predictions: `reports/test-evaluation/predictions/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2) +- Bootstrap: 1000 resamples, project clusters, seed 0 +- Documents: 146 (139 with gold conditions, 7 without) + +## Headline metrics (95% bootstrap intervals) + +| Metric | Estimate | 95% CI | +|---|---:|:---:| +| Typed condition micro-F1 (span + category + role) | 0.154 | [0.125, 0.186] | +| Exact span F1 | 0.177 | [0.146, 0.207] | +| Exact span precision | 0.114 | [0.092, 0.137] | +| Exact span recall | 0.393 | [0.337, 0.444] | +| Role macro-F1 (roles with gold support) | 0.125 | [0.087, 0.171] | +| Category macro-F1 | 0.158 | [0.126, 0.197] | +| Group exact-match F1 | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents with conditions | 0.043 | [0.014, 0.075] | +| Complete-document exact match, documents without conditions | 0.571 | [0.167, 1.000] | +| False prerequisite rate (lower is better) | 0.650 | [0.605, 0.691] | +| Reversed meaning rate (lower is better) | 0.005 | [0.000, 0.014] | +| Category accuracy on exactly matched spans | 0.893 | [0.835, 0.946] | +| Role accuracy on exactly matched spans | 0.979 | [0.955, 0.994] | + +## Per-role results (exact span + role) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| REQUIRED | 0.135 | 0.401 | 0.202 | 299 | +| EXCEPTION | 0.088 | 0.273 | 0.133 | 11 | +| NOT_REQUIRED | 0.063 | 0.562 | 0.114 | 16 | +| UNCERTAIN | 0.031 | 0.167 | 0.053 | 30 | + +## Per-category results (exact span + category) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| CONFIGURATION | 0.133 | 0.316 | 0.188 | 57 | +| USAGE | 0.095 | 0.343 | 0.149 | 166 | +| ACCESS | 0.112 | 0.429 | 0.177 | 91 | +| PLATFORM | 0.077 | 0.262 | 0.119 | 42 | + +## Precision versus coverage + +| Coverage | Confidence ≥ | Typed precision | Retained recall | +|---:|---:|---:|---:| +| 10% | 0.953 | 0.382 | 0.132 | +| 20% | 0.886 | 0.286 | 0.197 | +| 30% | 0.803 | 0.220 | 0.228 | +| 40% | 0.732 | 0.185 | 0.256 | +| 50% | 0.669 | 0.161 | 0.278 | +| 60% | 0.616 | 0.145 | 0.301 | +| 70% | 0.569 | 0.132 | 0.317 | +| 80% | 0.520 | 0.120 | 0.331 | +| 90% | 0.447 | 0.110 | 0.340 | +| 100% | 0.203 | 0.099 | 0.343 | diff --git a/reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_manual.md b/reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_manual.md new file mode 100644 index 0000000..e781d4a --- /dev/null +++ b/reports/test-evaluation/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2_manual.md @@ -0,0 +1,57 @@ +# Test split, 4 hand-labelled records: deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: manual; 4 documents) +- Predictions: `reports/test-evaluation/predictions/deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2.jsonl` (deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2) +- Bootstrap: 1000 resamples, project clusters, seed 0 +- Documents: 4 (3 with gold conditions, 1 without) + +## Headline metrics (95% bootstrap intervals) + +| Metric | Estimate | 95% CI | +|---|---:|:---:| +| Typed condition micro-F1 (span + category + role) | 0.133 | [0.000, 0.235] | +| Exact span F1 | 0.200 | [0.000, 0.545] | +| Exact span precision | 0.130 | [0.000, 0.375] | +| Exact span recall | 0.429 | [0.000, 1.000] | +| Role macro-F1 (roles with gold support) | 0.413 | [0.000, 0.545] | +| Category macro-F1 | 0.206 | [0.000, 0.343] | +| Group exact-match F1 | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents without conditions | 0.000 | [0.000, 0.000] | +| False prerequisite rate (lower is better) | 0.684 | [0.500, 0.889] | +| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] | +| Category accuracy on exactly matched spans | 0.667 | [0.000, 1.000] | +| Role accuracy on exactly matched spans | 1.000 | [0.000, 1.000] | + +## Per-role results (exact span + role) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| REQUIRED | 0.105 | 0.333 | 0.160 | 6 | +| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 | +| NOT_REQUIRED | 0.500 | 1.000 | 0.667 | 1 | +| UNCERTAIN | 0.000 | 0.000 | 0.000 | 0 | + +## Per-category results (exact span + category) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| CONFIGURATION | 0.000 | 0.000 | 0.000 | 0 | +| USAGE | 0.000 | 0.000 | 0.000 | 3 | +| ACCESS | 0.200 | 1.000 | 0.333 | 1 | +| PLATFORM | 0.250 | 0.333 | 0.286 | 3 | + +## Precision versus coverage + +| Coverage | Confidence ≥ | Typed precision | Retained recall | +|---:|---:|---:|---:| +| 9% | 0.961 | 0.000 | 0.000 | +| 22% | 0.777 | 0.000 | 0.000 | +| 30% | 0.693 | 0.000 | 0.000 | +| 39% | 0.646 | 0.000 | 0.000 | +| 52% | 0.574 | 0.083 | 0.143 | +| 61% | 0.562 | 0.071 | 0.143 | +| 70% | 0.522 | 0.062 | 0.143 | +| 78% | 0.512 | 0.056 | 0.143 | +| 91% | 0.481 | 0.048 | 0.143 | +| 100% | 0.393 | 0.087 | 0.286 | diff --git a/reports/test-evaluation/model_drafted_test_ids.json b/reports/test-evaluation/model_drafted_test_ids.json new file mode 100644 index 0000000..869c479 --- /dev/null +++ b/reports/test-evaluation/model_drafted_test_ids.json @@ -0,0 +1,148 @@ +[ +"GHSA-238w-f66p-w349", +"GHSA-258h-f687-4226", +"GHSA-2799-6g5r-mmc7", 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+{"advisory_id":"GHSA-2g6r-c272-w58r","content_hash":"9236e1f4971d0e55d195e471a287f279a3b6e7af04810c0d646cdccbc11a576f","preprocessing_version":"1","model_id":"rules-2","document_status":"HAS_CONDITIONS","conditions":[{"id":"c1","span":[291,339],"category":"CONFIGURATION","role":"REQUIRED","source":"rules","confidence":0.55}],"groups":[],"review_flags":[]} diff --git a/reports/test-evaluation/rules-2_agreement.md b/reports/test-evaluation/rules-2_agreement.md new file mode 100644 index 0000000..2520607 --- /dev/null +++ b/reports/test-evaluation/rules-2_agreement.md @@ -0,0 +1,57 @@ +# Test split, agreement with 146 model-drafted records: rules-2 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: all; subset `reports/test-evaluation/model_drafted_test_ids.json`; 146 documents) +- Predictions: `reports/test-evaluation/predictions/rules-2.jsonl` (rules-2) +- Bootstrap: 1000 resamples, project clusters, seed 0 +- Documents: 146 (139 with gold conditions, 7 without) + +## Headline metrics (95% bootstrap intervals) + +| Metric | Estimate | 95% CI | +|---|---:|:---:| +| Typed condition micro-F1 (span + category + role) | 0.048 | [0.021, 0.082] | +| Exact span F1 | 0.070 | [0.035, 0.110] | +| Exact span precision | 0.101 | [0.051, 0.168] | +| Exact span recall | 0.053 | [0.027, 0.081] | +| Role macro-F1 (roles with gold support) | 0.017 | [0.008, 0.028] | +| Category macro-F1 | 0.060 | [0.024, 0.103] | +| Group exact-match F1 | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents without conditions | 0.857 | [0.500, 1.000] | +| False prerequisite rate (lower is better) | 0.646 | [0.500, 0.762] | +| Reversed meaning rate (lower is better) | 0.043 | [0.000, 0.102] | +| Category accuracy on exactly matched spans | 0.842 | [0.615, 1.000] | +| Role accuracy on exactly matched spans | 0.789 | [0.600, 0.947] | + +## Per-role results (exact span + role) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| REQUIRED | 0.115 | 0.050 | 0.070 | 299 | +| EXCEPTION | 0.000 | 0.000 | 0.000 | 11 | +| NOT_REQUIRED | 0.000 | 0.000 | 0.000 | 16 | +| UNCERTAIN | 0.000 | 0.000 | 0.000 | 30 | + +## Per-category results (exact span + category) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| CONFIGURATION | 0.119 | 0.123 | 0.121 | 57 | +| USAGE | 0.111 | 0.036 | 0.055 | 166 | +| ACCESS | 0.030 | 0.022 | 0.025 | 91 | +| PLATFORM | 0.125 | 0.024 | 0.040 | 42 | + +## Precision versus coverage + +| Coverage | Confidence ≥ | Typed precision | Retained recall | +|---:|---:|---:|---:| +| 10% | 0.600 | 0.053 | 0.003 | +| 20% | 0.600 | 0.053 | 0.006 | +| 30% | 0.600 | 0.054 | 0.008 | +| 40% | 0.550 | 0.040 | 0.008 | +| 50% | 0.550 | 0.053 | 0.014 | +| 60% | 0.550 | 0.062 | 0.020 | +| 70% | 0.550 | 0.083 | 0.031 | +| 80% | 0.400 | 0.080 | 0.034 | +| 90% | 0.350 | 0.071 | 0.034 | +| 100% | 0.350 | 0.069 | 0.037 | diff --git a/reports/test-evaluation/rules-2_manual.md b/reports/test-evaluation/rules-2_manual.md new file mode 100644 index 0000000..48dbbd5 --- /dev/null +++ b/reports/test-evaluation/rules-2_manual.md @@ -0,0 +1,57 @@ +# Test split, 4 hand-labelled records: rules-2 + +- Gold: `annotations/batches/batch-04.jsonl`, `annotations/pilot/pilot-2.jsonl` (test split of `splits/pool-v1.json`; origin: manual; 4 documents) +- Predictions: `reports/test-evaluation/predictions/rules-2.jsonl` (rules-2) +- Bootstrap: 1000 resamples, project clusters, seed 0 +- Documents: 4 (3 with gold conditions, 1 without) + +## Headline metrics (95% bootstrap intervals) + +| Metric | Estimate | 95% CI | +|---|---:|:---:| +| Typed condition micro-F1 (span + category + role) | 0.167 | [0.000, 0.286] | +| Exact span F1 | 0.167 | [0.000, 0.286] | +| Exact span precision | 0.200 | [0.000, 0.333] | +| Exact span recall | 0.143 | [0.000, 0.250] | +| Role macro-F1 (roles with gold support) | 0.250 | [0.000, 0.250] | +| Category macro-F1 | 0.167 | [0.000, 0.250] | +| Group exact-match F1 | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents with conditions | 0.000 | [0.000, 0.000] | +| Complete-document exact match, documents without conditions | 1.000 | [0.000, 1.000] | +| False prerequisite rate (lower is better) | 0.500 | [0.000, 1.000] | +| Reversed meaning rate (lower is better) | 0.000 | [0.000, 0.000] | +| Category accuracy on exactly matched spans | 1.000 | [0.000, 1.000] | +| Role accuracy on exactly matched spans | 1.000 | [0.000, 1.000] | + +## Per-role results (exact span + role) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| REQUIRED | 0.000 | 0.000 | 0.000 | 6 | +| EXCEPTION | 0.000 | 0.000 | 0.000 | 0 | +| NOT_REQUIRED | 0.333 | 1.000 | 0.500 | 1 | +| UNCERTAIN | 0.000 | 0.000 | 0.000 | 0 | + +## Per-category results (exact span + category) + +| Label | Precision | Recall | F1 | Gold support | +|---|---:|---:|---:|---:| +| CONFIGURATION | 0.000 | 0.000 | 0.000 | 0 | +| USAGE | 0.000 | 0.000 | 0.000 | 3 | +| ACCESS | 0.333 | 1.000 | 0.500 | 1 | +| PLATFORM | 0.000 | 0.000 | 0.000 | 3 | + +## Precision versus coverage + +| Coverage | Confidence ≥ | Typed precision | Retained recall | +|---:|---:|---:|---:| +| 20% | 0.600 | 1.000 | 0.143 | +| 20% | 0.600 | 1.000 | 0.143 | +| 40% | 0.600 | 0.500 | 0.143 | +| 40% | 0.600 | 0.500 | 0.143 | +| 40% | 0.600 | 0.500 | 0.143 | +| 60% | 0.600 | 0.333 | 0.143 | +| 80% | 0.550 | 0.250 | 0.143 | +| 80% | 0.550 | 0.250 | 0.143 | +| 80% | 0.550 | 0.250 | 0.143 | +| 100% | 0.550 | 0.200 | 0.143 | diff --git a/scripts/experiments/test_evaluation.sh b/scripts/experiments/test_evaluation.sh new file mode 100644 index 0000000..dd0f289 --- /dev/null +++ b/scripts/experiments/test_evaluation.sh @@ -0,0 +1,40 @@ +#!/usr/bin/env bash +# Declared, one-time evaluation on the locked test split. +# +# bash scripts/experiments/test_evaluation.sh "" +# +# Scores the frozen predictions in reports/test-evaluation/predictions/ (rules-2, the CRF +# crf-batches-01-02 of v0.1.0, the run-3 DeBERTa of model-deberta-3-run3) on the test split of +# pool-v1, in two slices: +# - agreement: the 146 model-drafted test records (batch-04 and pilot-2; subset file +# model_drafted_test_ids.json). These measure agreement with the drafting model, not accuracy; +# - accuracy: the 4 hand-labelled test records (`--gold-origin manual`). +# Then paired comparisons: CRF vs DeBERTa and CRF vs rules-2, on both slices. +# Every run is appended to docs/test-access-log.md with the reason. Run it only for a declared +# release evaluation; nothing may be tuned on these results. +set -euo pipefail +[ -f pyproject.toml ] && [ -d annotations ] || { echo "run from the repository root" >&2; exit 1; } +REASON=${1:?usage: test_evaluation.sh ""} + +TM=(uv run --no-sync triggermap) +OUT=reports/test-evaluation +P=$OUT/predictions +GOLD=(annotations/batches/batch-04.jsonl --add-gold annotations/pilot/pilot-2.jsonl) +TEST=(--split test --release-evaluation "$REASON") +AGREE=(--subset "$OUT/model_drafted_test_ids.json") +MANUAL=(--gold-origin manual) +CRF=crf-batches-01-02 +DEB=deberta-3-base-bio_weightingsqrt-learning_rate5e-05-seed2 + +for model in rules-2 "$CRF" "$DEB"; do + "${TM[@]}" evaluate "${GOLD[0]}" "$P/$model.jsonl" "${GOLD[@]:1}" "${TEST[@]}" "${AGREE[@]}" \ + --title "Test split, agreement with 146 model-drafted records: $model" --out "$OUT/${model}_agreement.md" + "${TM[@]}" evaluate "${GOLD[0]}" "$P/$model.jsonl" "${GOLD[@]:1}" "${TEST[@]}" "${MANUAL[@]}" \ + --title "Test split, 4 hand-labelled records: $model" --out "$OUT/${model}_manual.md" +done +for other in "$DEB" rules-2; do + "${TM[@]}" compare "${GOLD[0]}" "$P/$CRF.jsonl" "$P/$other.jsonl" "${GOLD[@]:1}" "${TEST[@]}" "${AGREE[@]}" \ + --title "Test split, agreement (146): $other minus $CRF" --out "$OUT/compare_agreement_$other.md" + "${TM[@]}" compare "${GOLD[0]}" "$P/$CRF.jsonl" "$P/$other.jsonl" "${GOLD[@]:1}" "${TEST[@]}" "${MANUAL[@]}" \ + --title "Test split, hand-labelled (4): $other minus $CRF" --out "$OUT/compare_manual_$other.md" +done