From eafe97a82e932d3f7df2604091cdefa8587175d7 Mon Sep 17 00:00:00 2001 From: Denis Yuen Date: Thu, 27 Aug 2026 16:52:49 -0400 Subject: [PATCH 1/3] test cli without versions --- THIRD-PARTY-LICENSES.txt | 6 +++--- .../generated/src/main/resources/pom.xml | 8 ++++---- .../generated/src/main/resources/pom.xml | 4 ++-- dockstore-client/generated/src/main/resources/pom.xml | 4 ++-- pom.xml | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-) diff --git a/THIRD-PARTY-LICENSES.txt b/THIRD-PARTY-LICENSES.txt index b08cbe6d1..178c209bb 100644 --- a/THIRD-PARTY-LICENSES.txt +++ b/THIRD-PARTY-LICENSES.txt @@ -40,8 +40,8 @@ Lists of 414 third-party dependencies. (Apache-2.0) AssertJ Core (org.assertj:assertj-core:3.27.7 - https://assertj.github.io/doc/#assertj-core) (Apache 2.0) async-http-client-backend (com.softwaremill.sttp:async-http-client-backend_2.13:1.7.2 - http://softwaremill.com/open-source) (Apache 2.0) async-http-client-backend-cats (com.softwaremill.sttp:async-http-client-backend-cats_2.13:1.7.2 - http://softwaremill.com/open-source) - (The Apache Software License, Version 2.0) Asynchronous Http Client (org.asynchttpclient:async-http-client:2.15.0 - http://github.com/AsyncHttpClient/async-http-client/async-http-client) - (The Apache Software License, Version 2.0) Asynchronous Http Client Netty Utils (org.asynchttpclient:async-http-client-netty-utils:2.15.0 - http://github.com/AsyncHttpClient/async-http-client/async-http-client-netty-utils) + (The Apache Software License, Version 2.0) Asynchronous Http Client (org.asynchttpclient:async-http-client:2.16.0 - http://github.com/AsyncHttpClient/async-http-client/async-http-client) + (The Apache Software License, Version 2.0) Asynchronous Http Client Netty Utils (org.asynchttpclient:async-http-client-netty-utils:2.16.0 - http://github.com/AsyncHttpClient/async-http-client/async-http-client-netty-utils) (Apache 2.0) AutoValue Annotations (com.google.auto.value:auto-value-annotations:1.9 - https://github.com/google/auto/tree/master/value) (Apache License, Version 2.0) AWS Event Stream (software.amazon.eventstream:eventstream:1.0.1 - https://github.com/awslabs/aws-eventstream-java) (Apache License, Version 2.0) AWS Java SDK :: Annotations (software.amazon.awssdk:annotations:2.31.56 - https://aws.amazon.com/sdkforjava/core/annotations) @@ -281,7 +281,7 @@ Lists of 414 third-party dependencies. (Apache License, Version 2.0) Joda-Time (joda-time:joda-time:2.12.5 - https://www.joda.org/joda-time/) (Public Domain) JSON in Java (org.json:json:20231013 - https://github.com/douglascrockford/JSON-java) (The Apache Software License, Version 2.0) JSON.simple (com.googlecode.json-simple:json-simple:1.1.1 - http://code.google.com/p/json-simple/) - (The MIT License) jsoup Java HTML Parser (org.jsoup:jsoup:1.19.1 - https://jsoup.org/) + (The MIT License) jsoup Java HTML Parser (org.jsoup:jsoup:1.23.1 - https://jsoup.org/) (The Apache License, Version 2.0) JSpecify annotations (org.jspecify:jspecify:1.0.0 - http://jspecify.org/) (Apache License, Version 2.0) JSR 354 (Money and Currency API) (javax.money:money-api:1.1 - https://javamoney.github.io/) (MIT) JUL to SLF4J bridge (org.slf4j:jul-to-slf4j:2.0.18 - http://www.slf4j.org) diff --git a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml index 1619619c7..40b50c973 100644 --- a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml +++ b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml @@ -36,7 +36,7 @@ io.dockstore dockstore-integration-testing - 1.21.0-alpha.1 + 1.21.0-alpha.2 tests compile @@ -49,7 +49,7 @@ io.dockstore dockstore-common - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile @@ -61,7 +61,7 @@ io.dockstore dockstore-webservice - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile @@ -73,7 +73,7 @@ io.dockstore openapi-java-client - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile diff --git a/dockstore-cli-reports/generated/src/main/resources/pom.xml b/dockstore-cli-reports/generated/src/main/resources/pom.xml index e7f34e5bb..57b97031b 100644 --- a/dockstore-cli-reports/generated/src/main/resources/pom.xml +++ b/dockstore-cli-reports/generated/src/main/resources/pom.xml @@ -30,13 +30,13 @@ io.dockstore dockstore-webservice - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile io.dockstore dockstore-common - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile diff --git a/dockstore-client/generated/src/main/resources/pom.xml b/dockstore-client/generated/src/main/resources/pom.xml index a15305e81..006afe566 100644 --- a/dockstore-client/generated/src/main/resources/pom.xml +++ b/dockstore-client/generated/src/main/resources/pom.xml @@ -66,7 +66,7 @@ io.dockstore dockstore-common - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile @@ -82,7 +82,7 @@ io.dockstore openapi-java-client - 1.21.0-alpha.1 + 1.21.0-alpha.2 compile diff --git a/pom.xml b/pom.xml index 94b44d091..6c98698de 100644 --- a/pom.xml +++ b/pom.xml @@ -38,7 +38,7 @@ scm:git:git@github.com:dockstore/dockstore-cli.git UTF-8 - 1.21.0-alpha.1 + 1.21.0-alpha.2 2.22.2 2.22.2 false From f2322f9b77b36e592344581e8facb16fff31738e Mon Sep 17 00:00:00 2001 From: Denis Yuen Date: Fri, 28 Aug 2026 11:42:10 -0400 Subject: [PATCH 2/3] test more version include removal --- .../generated/src/main/resources/pom.xml | 8 ++++---- .../generated/src/main/resources/pom.xml | 4 ++-- dockstore-client/generated/src/main/resources/pom.xml | 4 ++-- pom.xml | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-) diff --git a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml index 40b50c973..ca5b70caf 100644 --- a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml +++ b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml @@ -36,7 +36,7 @@ io.dockstore dockstore-integration-testing - 1.21.0-alpha.2 + 1.21.0-alpha.3 tests compile @@ -49,7 +49,7 @@ io.dockstore dockstore-common - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile @@ -61,7 +61,7 @@ io.dockstore dockstore-webservice - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile @@ -73,7 +73,7 @@ io.dockstore openapi-java-client - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile diff --git a/dockstore-cli-reports/generated/src/main/resources/pom.xml b/dockstore-cli-reports/generated/src/main/resources/pom.xml index 57b97031b..e73eb87a1 100644 --- a/dockstore-cli-reports/generated/src/main/resources/pom.xml +++ b/dockstore-cli-reports/generated/src/main/resources/pom.xml @@ -30,13 +30,13 @@ io.dockstore dockstore-webservice - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile io.dockstore dockstore-common - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile diff --git a/dockstore-client/generated/src/main/resources/pom.xml b/dockstore-client/generated/src/main/resources/pom.xml index 006afe566..b000f5962 100644 --- a/dockstore-client/generated/src/main/resources/pom.xml +++ b/dockstore-client/generated/src/main/resources/pom.xml @@ -66,7 +66,7 @@ io.dockstore dockstore-common - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile @@ -82,7 +82,7 @@ io.dockstore openapi-java-client - 1.21.0-alpha.2 + 1.21.0-alpha.3 compile diff --git a/pom.xml b/pom.xml index 6c98698de..183c659db 100644 --- a/pom.xml +++ b/pom.xml @@ -38,7 +38,7 @@ scm:git:git@github.com:dockstore/dockstore-cli.git UTF-8 - 1.21.0-alpha.2 + 1.21.0-alpha.3 2.22.2 2.22.2 false From 98d167022dd8ff6891af5d87f500a65ec84c7eff Mon Sep 17 00:00:00 2001 From: Denis Yuen Date: Wed, 2 Sep 2026 14:46:03 -0400 Subject: [PATCH 3/3] more test --- .../generated/src/main/resources/pom.xml | 8 ++++---- .../generated/src/main/resources/pom.xml | 4 ++-- dockstore-client/generated/src/main/resources/pom.xml | 4 ++-- pom.xml | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-) diff --git a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml index ca5b70caf..cc39683e8 100644 --- a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml +++ b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml @@ -36,7 +36,7 @@ io.dockstore dockstore-integration-testing - 1.21.0-alpha.3 + 1.21.0-alpha.4 tests compile @@ -49,7 +49,7 @@ io.dockstore dockstore-common - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile @@ -61,7 +61,7 @@ io.dockstore dockstore-webservice - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile @@ -73,7 +73,7 @@ io.dockstore openapi-java-client - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile diff --git a/dockstore-cli-reports/generated/src/main/resources/pom.xml b/dockstore-cli-reports/generated/src/main/resources/pom.xml index e73eb87a1..3af6f7bfd 100644 --- a/dockstore-cli-reports/generated/src/main/resources/pom.xml +++ b/dockstore-cli-reports/generated/src/main/resources/pom.xml @@ -30,13 +30,13 @@ io.dockstore dockstore-webservice - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile io.dockstore dockstore-common - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile diff --git a/dockstore-client/generated/src/main/resources/pom.xml b/dockstore-client/generated/src/main/resources/pom.xml index b000f5962..8d126e95a 100644 --- a/dockstore-client/generated/src/main/resources/pom.xml +++ b/dockstore-client/generated/src/main/resources/pom.xml @@ -66,7 +66,7 @@ io.dockstore dockstore-common - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile @@ -82,7 +82,7 @@ io.dockstore openapi-java-client - 1.21.0-alpha.3 + 1.21.0-alpha.4 compile diff --git a/pom.xml b/pom.xml index 183c659db..7a3f073b5 100644 --- a/pom.xml +++ b/pom.xml @@ -38,7 +38,7 @@ scm:git:git@github.com:dockstore/dockstore-cli.git UTF-8 - 1.21.0-alpha.3 + 1.21.0-alpha.4 2.22.2 2.22.2 false