From 1d07262c310c09961482e23e378f2e45fb110894 Mon Sep 17 00:00:00 2001
From: mdhumphries <drmdhumphries+github@gmail.com>
Date: Wed, 12 Aug 2026 17:22:32 +0100
Subject: [PATCH 1/2] Update sources.yaml with new papers and images

Added a new stochastic model foraging paper and updated image links for existing papers.
---
 _data/sources.yaml | 18 +++++++++++++++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/_data/sources.yaml b/_data/sources.yaml
index 011d08ce..3d93f01c 100644
--- a/_data/sources.yaml
+++ b/_data/sources.yaml
@@ -1,3 +1,13 @@
+# stochastic model foraging paper
+- id: doi:10.1038/s44271-026-00465-0
+  image: https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs44271-026-00465-0/MediaObjects/44271_2026_465_Fig1_HTML.png?as=webp
+  tags:
+    - behaviour
+  buttons:
+  - type: source
+    text: code
+    link: https://github.com/Humphries-Lab/Foraging-variability
+    
 # computational bottleneck
 - id: doi:10.1523/ENEURO.0431-23.2024
   image: https://www.eneuro.org/content/eneuro/12/4/ENEURO.0431-23.2024/F2.medium.gif
@@ -43,14 +53,14 @@
       
 # Activity subspaces in mPfC   
 - id: doi:10.1523/JNEUROSCI.1412-21.2022
-  image: https://www.jneurosci.org/content/jneuro/42/20/4131/F2.medium.gif
+  image: images/Paper_Figures/Maggi_JNeurosci2022_figure2.jpg
   tags:
     - prefrontal-cortex
     - latent-dynamics
 
 # Bayesian inference of connections between neurons
 - id: doi:10.1523/jneurosci.1487-21.2021
-  image: https://www.jneurosci.org/content/jneuro/42/8/1417/F10.medium.gif
+  image: images/Paper_Figures/Cinotti_JNeurosci2021_figure10.jpg
   tags:
     - basal-ganglia
     - Bayesian
@@ -209,7 +219,9 @@
 
       
 # papers to remove from ORCID: bioRxiv versions of published papers
-
+# stochastic foraging model Comm Psych preprint
+- id: doi:10.1101/2025.10.28.685063 
+  remove: true
   
 # bottleneck preprint
 - id: doi:10.1101/2024.10.23.619790

From 7fcfdb46e5bd99a698df348b8249ac455af0b3e2 Mon Sep 17 00:00:00 2001
From: mdhumphries <9415988+mdhumphries@users.noreply.github.com>
Date: Thu, 13 Aug 2026 09:54:22 +0000
Subject: [PATCH 2/2] Update citations

---
 _cite/.cache/cache.db | Bin 57344 -> 57344 bytes
 _data/citations.yaml  |  28 +++++++++++-----------------
 2 files changed, 11 insertions(+), 17 deletions(-)

diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db
index 0ff4c46a9742bc26f0fcd3a6feb4e2467854df5e..2abfe3ac30a73ee0420f5cf27314ff9eb1cf3afd 100644
GIT binary patch
delta 549
zcmZoTz}#?vc>}uwHy7V@eo?-&e24g1Hw!6D<l|#t;9-CQ!G4j+8}&5OM41&ClS^}Q
z;&U={GfTLDD*A<(<vB_c)8jMqQc^2m>KPbV8F>2znH4#TOA<>mi%T+-i@EriMVX5;
zt5O+WuaM}MVK!w<$t=!}FUU;J&Pk0gD9SI%PtMO_mFSnAY_Bh6EX8cdSzMTtS&|xG
zT$z`gQIwyTUs^2QFUhRS0u|5AO)Q89naBdPSF&GXa*w{WlsL0K6I4DqF*yUM8>m2m
zL9}0N@<DxZM&Zpj^#%ADCry53XT~^XvZB3M{bYV-MJ9wh*(XXen=)Z@8~Yq_W<!Wf
zZf0J5S|-rlAk*1rgTyf%%RWn#Sr;Y_cP#r%31(xMXjXnHcTrwqPJC{DN-Fz|$p`Jl
zG^Zn(mRMSnA77T3Tw0pTJ`LnfMCh|m-Q-ZK%eu4JYs2)-O}Q_aIQT#F2JkxbmTfL7
z;O1pb6$VSxio{!knU1&SgVh3QFdrBVEQY4~W`_EyhQ>yw$%f`e$wp}wrj`bYMiz-?
RMyW|D7OAP5FW%8-1^~{Gu%iF~

delta 549
zcmZoTz}#?vc>}uwH!t6Geo?-&e24fMHVY|C<l_@y;ADUT!G4a(8}&5OIGGh0lS^}Q
z;&U={GfTJ_7<l^GnB_T264T=|^HNePpvrmsS(z0%ic1npGK)(xlZ%1EtPEUy%%aT2
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zz#!VsHTj^vI3xS!oB9I$jBS%&*_knROjfiPt8eFLR%Ajrmc3Py*^~*J+t??FGaEu=
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zn%zjIC6<=t$Co80mzL(TcY)lA2z~a>O%AoXtf}+oc(rYA%6-Aa!CS`vnKyvfd2>+#
zH!rK8Jy@bvB;Fd#bi6emtQJUv`M_vkF*egTPti9_v^29cGD%D_NHw=eGcvbKOHDB_
QNHRCDOfuVi@s2(-07*rz9RL6T

diff --git a/_data/citations.yaml b/_data/citations.yaml
index 828655ae..ecfd41b3 100644
--- a/_data/citations.yaml
+++ b/_data/citations.yaml
@@ -38,8 +38,15 @@
   date: '2026-05-19'
   link: https://doi.org/hb4xhx
   orcid: 0000-0002-1906-2581
-  plugin: orcid.py
-  file: orcid.yaml
+  plugin: sources.py
+  file: sources.yaml
+  image: https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs44271-026-00465-0/MediaObjects/44271_2026_465_Fig1_HTML.png?as=webp
+  tags:
+  - behaviour
+  buttons:
+  - type: source
+    text: code
+    link: https://github.com/Humphries-Lab/Foraging-variability
 - id: doi:10.64898/2026.02.16.706176
   title: Primary and Supplementary Motor cortex implement parallel control solutions
     for rhythmic and discrete arm movements
@@ -53,19 +60,6 @@
   orcid: 0000-0002-1906-2581
   plugin: orcid.py
   file: orcid.yaml
-- id: doi:10.1101/2025.10.28.685063
-  title: Stochastic choice drives variability in patch foraging decisions in humans
-    and rats
-  authors:
-  - Emma V. Scholey
-  - Matthew A.J. Apps
-  - Mark D. Humphries
-  publisher: openRxiv
-  date: '2025-10-29'
-  link: https://doi.org/g98xgz
-  orcid: 0000-0002-1906-2581
-  plugin: orcid.py
-  file: orcid.yaml
 - id: doi:10.1523/ENEURO.0431-23.2024
   title: The Computational Bottleneck of Basal Ganglia Output (and What to Do About
     it)
@@ -155,7 +149,7 @@
   orcid: 0000-0002-1906-2581
   plugin: sources.py
   file: sources.yaml
-  image: https://www.jneurosci.org/content/jneuro/42/20/4131/F2.medium.gif
+  image: images/Paper_Figures/Maggi_JNeurosci2022_figure2.jpg
   tags:
   - prefrontal-cortex
   - latent-dynamics
@@ -171,7 +165,7 @@
   orcid: 0000-0002-1906-2581
   plugin: sources.py
   file: sources.yaml
-  image: https://www.jneurosci.org/content/jneuro/42/8/1417/F10.medium.gif
+  image: images/Paper_Figures/Cinotti_JNeurosci2021_figure10.jpg
   tags:
   - basal-ganglia
   - Bayesian